3PHM Oxidoreductase date May 25, 1999
title Reduced (Cu+) Peptidylglycine Alpha-Hydroxylating Monooxygen
authors S.T.Prigge, L.M.Amzel
compound source
Molecule: Protein (Peptidylglycine Alpha-Hydroxylating Monooxygenase);
Chain: A
Synonym: Peptidylglycine Monooxygenase, Peptidylglycine 2- Hydroxylase, Phm;
Ec: 1.14.17.3
Engineered: Yes
Other_details: Reduced (Cu+), Ascorbate Soaked
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Dg44
Organ: Ovary
Organelle: Secretory Vesicles
Cellular_location: Excreted
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Dg44
Expression_system_cellular_location: Excreted
Expression_system_vector_type: Virus
Expression_system_vector: Cytomegalovirus
Expression_system_plasmid: Pcis
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.519 68.770 82.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand AZI, CU, GOL, NI enzyme Oxidoreductase E.C.1.14.17.3 BRENDA
related structures by homologous chain: 1PHM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate-mediated electron transfer in peptidylglycine alpha-hydroxylating monooxygenase., Prigge ST, Kolhekar AS, Eipper BA, Mains RE, Amzel LM, Nat Struct Biol 1999 Oct;6(10):976-83. PMID:10504734
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3phm.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3PHM
  • CSU: Contacts of Structural Units for 3PHM
  • Likely Quarternary Molecular Structure file(s) for 3PHM
  • Retrieve 3PHM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PHM from S2C, [Save to disk]
  • View 3PHM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PHM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PHM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3phma2, region A:199-354 [Jmol] [rasmolscript] [script source]
        - Domain d3phma1, region A:45-198 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3phm_A] [3phm]
  • SWISS-PROT database: [P14925]
  • Domain organization of [AMD_RAT] by SWISSPFAM
  • Other resources with information on 3PHM
  • Community annotation for 3PHM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science