1PMU	Transferase	date	Jun 11, 2003
title	The Crystal Structure Of Jnk3 In Complex With A Phenantroline Inhibitor
authors	G.Scapin, S.B.Patel, J.Lisnock, J.W.Becker, P.V.Lograsso
compound		source
Molecule: Mitogen-Activated Protein Kinase 10 Chain: A Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N- Terminal Kinase 3, Map Kinase P49 3f12; Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mk10_human Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.401 62.377 98.119 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	9HP, CL BindingDB	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1UKI
Gene	MK10 (H. sapiens)
Gene Ontology	Chain Function Process Component A nucleotide binding protein kinase activity protein serine/threonine kin... JUN kinase activity MAP kinase activity MAP kinase kinase activity protein binding ATP binding kinase activity transferase activity transferase activity, transf... activation of MAPK activity toll-like receptor signaling... MyD88-dependent toll-like re... MyD88-independent toll-like ... protein phosphorylation signal transduction JNK cascade JUN phosphorylation phosphorylation toll-like receptor 2 signali... toll-like receptor 3 signali... toll-like receptor 4 signali... toll-like receptor 5 signali... toll-like receptor 9 signali... toll-like receptor 10 signal... TRIF-dependent toll-like rec... toll-like receptor TLR1:TLR2... toll-like receptor TLR6:TLR2... innate immune response regulation of sequence-speci... stress-activated MAPK cascad... nucleus nucleoplasm cytoplasm mitochondrion cytosol plasma membrane membrane
Primary reference	The structure of JNK3 in complex with small molecule inhibitors: structural basis for potency and selectivity., Scapin G, Patel SB, Lisnock J, Becker JW, LoGrasso PV, Chem Biol 2003 Aug;10(8):705-12. PMID:12954329

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1pmu.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 1PMU CSU: Contacts of Structural Units for 1PMU Likely Quarternary Molecular Structure file(s) for 1PMU Structure Factors (71 Kb) Retrieve 1PMU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PMU from S2C, [Save to disk] Re-refined 1pmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PMU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1PMU

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1PMU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pmua_, region A [Jmol] [rasmolscript] [script source] Fold representative 1pmu from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pmu_A] SWISS-PROT database: [P53779] Domain organization of [MK10_HUMAN] by SWISSPFAM Domain found in 1PMU: [S_TKc ] by SMART Alignments of the sequence of 1PMU with the sequences similar proteins can be viewed for 1PMU's classification [MK10_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MK10_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1PMU

Community annotation for 1PMU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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