1PMU Transferase date Jun 11, 2003
title The Crystal Structure Of Jnk3 In Complex With A Phenantroline Inhibitor
authors G.Scapin, S.B.Patel, J.Lisnock, J.W.Becker, P.V.Lograsso
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N- Terminal Kinase 3, Map Kinase P49 3f12;
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mk10_human
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.401 62.377 98.119 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 9HP, CL BindingDB enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1UKI
Gene MK10 (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of JNK3 in complex with small molecule inhibitors: structural basis for potency and selectivity., Scapin G, Patel SB, Lisnock J, Becker JW, LoGrasso PV, Chem Biol 2003 Aug;10(8):705-12. PMID:12954329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1pmu.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1PMU
  • CSU: Contacts of Structural Units for 1PMU
  • Likely Quarternary Molecular Structure file(s) for 1PMU
  • Structure Factors (71 Kb)
  • Retrieve 1PMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PMU from S2C, [Save to disk]
  • Re-refined 1pmu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PMU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PMU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pmua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pmu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pmu] [1pmu_A]
  • SWISS-PROT database: [P53779]
  • Domain organization of [MK10_HUMAN] by SWISSPFAM
  • Domain found in 1PMU: [S_TKc ] by SMART
  • Other resources with information on 1PMU
  • Community annotation for 1PMU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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