1UKI Transferase date Aug 23, 2003
title Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125
authors Y.S.Heo, Y.K.Kim, B.J.Sung, H.S.Lee, J.I.Lee, C.I.Seo, S. Y.Park, J.H.Kim, Y.L.Hyun, Y.H.Jeon, S.Ro, T.G.Lee, J.M.Cho, K.Y.Hwang, C.H.Yang
compound source
Molecule: Mitogen-Activated Protein Kinase 8 Isoform 4
Chain: A
Fragment: Residues 1-369
Synonym: Jnk1
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b

Molecule: 11-Mer Peptide From C-Jun-Amino-Terminal Kinase Interacting Protein 1;
Chain: B
Synonym: Jip1
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Peptide Synthesis
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.697 79.460 82.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 537 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1PMU, 1PMV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the selective inhibition of JNK1 by the scaffolding protein JIP1 and SP600125., Heo YS, Kim SK, Seo CI, Kim YK, Sung BJ, Lee HS, Lee JI, Park SY, Kim JH, Hwang KY, Hyun YL, Jeon YH, Ro S, Cho JM, Lee TG, Yang CH, EMBO J 2004 Jun 2;23(11):2185-95. Epub 2004 May 13. PMID:15141161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1uki.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1UKI
  • CSU: Contacts of Structural Units for 1UKI
  • Likely Quarternary Molecular Structure file(s) for 1UKI
  • Structure Factors (84 Kb)
  • Retrieve 1UKI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UKI from S2C, [Save to disk]
  • Re-refined 1uki structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UKI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UKI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UKI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ukia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1uki from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uki_B] [1uki] [1uki_A]
  • SWISS-PROT database: [Q9WVI9] [P45983]
  • Domain organization of [JIP1_MOUSE] [MK08_HUMAN] by SWISSPFAM
  • Domain found in 1UKI: [S_TKc ] by SMART
  • Alignments of the sequence of 1UKI with the sequences similar proteins can be viewed for 1UKI's classification [JIP1_MOUSE] [MK08_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [JIP1_MOUSE] [MK08_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UKI
  • Community annotation for 1UKI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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