1POZ Cell Adhesion date Jun 16, 2003
title Solution Structure Of The Hyaluronan Binding Domain Of Human Cd44
authors P.Teriete, S.Banerji, C.D.Blundell, J.D.Kahmann, A.R.Pickford, A.J.Wright, I.D.Campbell, D.G.Jackson, A.J.Day
compound source
Molecule: Cd44 Antigen
Chain: A
Fragment: Hyaluronan Binding Domain
Synonym: Phagocytic Glycoprotein I, Pgp-1, Hutch-I, Extracellular Matrix Receptor-III, Ecmr-III, Gp90 Lymphocyte Homingadhesion Receptor, Hermes Antigen, Hyaluronate Receptor, Heparan Sulfate Proteoglycan, Epican, Cdw44;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd44
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Pet Vector
Expression_system_plasmid: Pet19b
methodSolution NMR
related structures by homologous chain: 1UUH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the regulatory hyaluronan binding domain in the inflammatory leukocyte homing receptor CD44., Teriete P, Banerji S, Noble M, Blundell CD, Wright AJ, Pickford AR, Lowe E, Mahoney DJ, Tammi MI, Kahmann JD, Campbell ID, Day AJ, Jackson DG, Mol Cell 2004 Feb 27;13(4):483-96. PMID:14992719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (818 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1POZ
  • Original NMR restraints for 1POZ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1POZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1POZ from S2C, [Save to disk]
  • View 1POZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1POZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1POZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1poza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1poz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1poz_A] [1poz]
  • SWISS-PROT database: [P16070]
  • Domain organization of [CD44_HUMAN] by SWISSPFAM
  • Domain found in 1POZ: [LINK ] by SMART
  • Other resources with information on 1POZ
  • Community annotation for 1POZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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