1UUH Lectin date Dec 19, 2003
title Hyaluronan Binding Domain Of Human Cd44
authors P.Teriete, S.Banerji, M.Noble, C.Blundell, A.Wright, A.Pickford, E D.Mahoney, M.Tammi, J.Kahmann, I.Campbell, A.Day, D.Jackson
compound source
Molecule: Cd44 Antigen
Chain: A, B
Fragment: Hyaluronan Binding Domain, Residues 20-178
Synonym: Phagocytic Glycoprotein I, Pgp-1, Hutch-I, Extrace Matrix Receptor-III, Ecmr-III, Gp90 Lymphocyte Homingadhes Receptor, Hermes Antigen, Hyaluronate Receptor, Heparan Sul Proteoglycan, Epican, Cdw44;
Engineered: Yes
Other_details: First Residue Is In Fact The Last Residue Of Signal Peptide, And Would Normally Be Cleaved
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: De3 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.881 77.266 87.668 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
related structures by homologous chain: 1POZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the regulatory hyaluronan binding domain in the inflammatory leukocyte homing receptor CD44., Teriete P, Banerji S, Noble M, Blundell CD, Wright AJ, Pickford AR, Lowe E, Mahoney DJ, Tammi MI, Kahmann JD, Campbell ID, Day AJ, Jackson DG, Mol Cell 2004 Feb 27;13(4):483-96. PMID:14992719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1uuh.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1uuh.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1UUH
  • CSU: Contacts of Structural Units for 1UUH
  • Likely Quarternary Molecular Structure file(s) for 1UUH
  • Structure Factors (468 Kb)
  • Retrieve 1UUH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UUH from S2C, [Save to disk]
  • Re-refined 1uuh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UUH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UUH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UUH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uuha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uuhb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uuh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uuh_A] [1uuh_B] [1uuh]
  • SWISS-PROT database: [P16070]
  • Domain organization of [CD44_HUMAN] by SWISSPFAM
  • Domain found in 1UUH: [LINK ] by SMART
  • Other resources with information on 1UUH
  • Community annotation for 1UUH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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