1PW3 Immune System date Jun 30, 2003
title Crystal Structure Of Jtor68s
authors C.Dealwis, V.Gupta, M.Wilkerson
compound source
Molecule: Immunoglobulin Lambda Chain Variable Region
Chain: A, B
Synonym: Jto
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jto
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-27b
symmetry Space Group: P 41 2 2
R_factor 0.219 R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
72.247 72.247 94.256 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CD enzyme
related structures by homologous chain: 1CD0, 1JVK
Primary referenceStructural basis of light chain amyloidogenicity: comparison of the thermodynamic properties, fibrillogenic potential and tertiary structural features of four V(lambda)6 proteins., Wall JS, Gupta V, Wilkerson M, Schell M, Loris R, Adams P, Solomon A, Stevens F, Dealwis C, J Mol Recognit 2004 Jul-Aug;17(4):323-31. PMID:15227639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1pw3.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (1pw3.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1PW3
  • CSU: Contacts of Structural Units for 1PW3
  • Likely Quarternary Molecular Structure file(s) for 1PW3
  • Structure Factors (132 Kb)
  • Retrieve 1PW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PW3 from S2C, [Save to disk]
  • Re-refined 1pw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PW3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PW3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pw3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pw3b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1pw3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pw3] [1pw3_B] [1pw3_A]
  • SWISS-PROT database: [Q96JD1]
  • Domain organization of [Q96JD1_HUMAN] by SWISSPFAM
  • Domain found in 1PW3: [IGv ] by SMART
  • Other resources with information on 1PW3
  • Community annotation for 1PW3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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