1JVK Immune System date Aug 30, 2001
title Three-Dimensional Structure Of An Immunoglobulin Light Chain Acting As A Lethal Amyloid Precursor
authors P.C.Bourne, P.A.Ramsland, L.Shan, Z.C.Fan, C.R.Dewitt, B.B.Shult S.S.Terzyan, A.B.Edmundson
compound source
Molecule: Immunoglobulin Lambda Light Chain
Chain: A, B
Synonym: Ig A L; Immunoglobulin Lambda-Chain; Ig A1 Bur
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.280 83.320 112.591 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand PCA enzyme
related structures by homologous chain: 1LGV, 1PW3
Primary referenceThree-dimensional structure of an immunoglobulin light-chain dimer with amyloidogenic properties., Bourne PC, Ramsland PA, Shan L, Fan ZC, DeWitt CR, Shultz BB, Terzyan SS, Moomaw CR, Slaughter CA, Guddat LW, Edmundson AB, Acta Crystallogr D Biol Crystallogr 2002 May;58(Pt 5):815-23. PMID:11976493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1jvk.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1JVK
  • CSU: Contacts of Structural Units for 1JVK
  • Likely Quarternary Molecular Structure file(s) for 1JVK
  • Structure Factors (445 Kb)
  • Retrieve 1JVK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JVK from S2C, [Save to disk]
  • Re-refined 1jvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JVK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JVK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JVK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jvka1, region A:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1jvka2, region A:113-216 [Jmol] [rasmolscript] [script source]
        - Domain d1jvkb1, region B:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1jvkb2, region B:113-215 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jvk_B] [1jvk] [1jvk_A]
  • SWISS-PROT database: [P01842] [Q6PJG0]
  • Domain organization of [LAC_HUMAN] [Q6PJG0_HUMAN] by SWISSPFAM
  • Domains found in 1JVK: [IG_like] [IGv ] by SMART
    • Other resources with information on 1JVK
  • Community annotation for 1JVK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science