1PY5	Crystal Structure of TGF-beta receptor I kinase with inhibitor	date
authors	Zhang, F., Sawyer, J.S.
compound		source
symmetry		R_factor R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	PY1, SO4 BindingDB	enzyme
related structures	by homologous chain: 1RW8, 1VJY
Gene Ontology	Chain Function Process Component A
Primary reference	Synthesis and activity of new aryl- and heteroaryl-substituted 5,6-dihydro-4H-pyrrolo[1,2-b]pyrazole inhibitors of the transforming growth factor-beta type I receptor kinase domain., Sawyer JS, Beight DW, Britt KS, Anderson BD, Campbell RM, Goodson T Jr, Herron DK, Li HY, McMillen WT, Mort N, Parsons S, Smith EC, Wagner JR, Yan L, Zhang F, Yingling JM, Bioorg Med Chem Lett 2004 Jul 5;14(13):3581-4. PMID:15177479

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1py5.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1PY5 CSU: Contacts of Structural Units for 1PY5 Likely Quarternary Molecular Structure file(s) for 1PY5 Retrieve 1PY5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PY5 from S2C, [Save to disk]

View 1PY5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PY5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PY5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1py5a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1py5] [1py5_A] SWISS-PROT database: [P36897] Domain organization of [TGFR1_HUMAN] by SWISSPFAM Domains found in 1PY5: [GS] [STYKc ] by SMART

Other resources with information on 1PY5

Community annotation for 1PY5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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