1VJY	Crystal Structure of a Naphthyridine Inhibitor of Human TGF-beta Type I Receptor	date
authors	Gellibert, F., Woolven, J., Fouchet, M.H., Mathews, N., Goodland, H., Lovegrove, V., Laroze, A., Nguyen, V.L., Sautet, S., Wang, R., Janson, C., Smith, W., Krysa, G., Boullay, V., Gouville, A.C.de., Huet, S., Hartley, D.
compound		source
symmetry		R_factor R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	460 BindingDB	enzyme
related structures	by homologous chain: 1PY5
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of 1,5-Naphthyridine Derivatives as a Novel Series of Potent and Selective TGF-beta Type I Receptor Inhibitors., Gellibert F, Woolven J, Fouchet MH, Mathews N, Goodland H, Lovegrove V, Laroze A, Nguyen VL, Sautet S, Wang R, Janson C, Smith W, Krysa G, Boullay V, De Gouville AC, Huet S, Hartley D, J Med Chem 2004 Aug 26;47(18):4494-4506. PMID:15317461

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1vjy.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 1VJY CSU: Contacts of Structural Units for 1VJY Likely Quarternary Molecular Structure file(s) for 1VJY Retrieve 1VJY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VJY from S2C, [Save to disk]

View 1VJY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VJY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VJY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vjya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vjy_A] [1vjy] SWISS-PROT database: [P36897] Domain organization of [TGFR1_HUMAN] by SWISSPFAM Domain found in 1VJY: [STYKc ] by SMART

Other resources with information on 1VJY

Community annotation for 1VJY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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