1VJY	Transferase	date	Apr 07, 2004
title	Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor
authors	F.Gellibert, J.Woolven, M.H.Fouchet, N.Mathews, H.Goodland, V.Lovegrove, A.Laroze, V.L.Nguyen, S.Sautet, R.Wang, C.Janson, W.Smith, G.Krysa, V.Boullay, A.C.De Gouville, S.Huet, D.Hartley
compound		source
Molecule: Tgf-Beta Receptor Type I Chain: A Fragment: Protein Kinase Synonym: Tgfr-1, Tgf-Beta Type I Receptor, Serinethreonine-Protein Kinase Receptor R4, Skr4, Activin Receptor-Like Kinase 5, Alk-5; Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.223 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.069 75.775 89.589 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	460 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1PY5
Primary reference	Identification of 1,5-Naphthyridine Derivatives as a Novel Series of Potent and Selective TGF-beta Type I Receptor Inhibitors., Gellibert F, Woolven J, Fouchet MH, Mathews N, Goodland H, Lovegrove V, Laroze A, Nguyen VL, Sautet S, Wang R, Janson C, Smith W, Krysa G, Boullay V, De Gouville AC, Huet S, Hartley D, J Med Chem 2004 Aug 26;47(18):4494-4506. PMID:15317461

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1vjy.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1VJY CSU: Contacts of Structural Units for 1VJY Likely Quarternary Molecular Structure file(s) for 1VJY Retrieve 1VJY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VJY from S2C, [Save to disk]

View 1VJY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1VJY

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1VJY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vjya_, region A [Jmol] [rasmolscript] [script source] Fold representative 1vjy from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vjy_A] SWISS-PROT database: [P36897] Domain organization of [TGFR1_HUMAN] by SWISSPFAM Domain found in 1VJY: [STYKc ] by SMART Alignments of the sequence of 1VJY with the sequences similar proteins can be viewed for 1VJY's classification [TGFR1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TGFR1_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1VJY

Community annotation for 1VJY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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