1VJY Transferase date Apr 07, 2004
title Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor
authors F.Gellibert, J.Woolven, M.H.Fouchet, N.Mathews, H.Goodland, V.Lovegrove, A.Laroze, V.L.Nguyen, S.Sautet, R.Wang, C.Janson, W.Smith, G.Krysa, V.Boullay, A.C.De Gouville, S.Huet, D.Hartley
compound source
Molecule: Tgf-Beta Receptor Type I
Chain: A
Fragment: Protein Kinase
Synonym: Tgfr-1, Tgf-Beta Type I Receptor, Serinethreonine-Protein Kinase Receptor R4, Skr4, Activin Receptor-Like Kinase 5, Alk-5;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.069 75.775 89.589 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 460 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1PY5
Primary referenceIdentification of 1,5-Naphthyridine Derivatives as a Novel Series of Potent and Selective TGF-beta Type I Receptor Inhibitors., Gellibert F, Woolven J, Fouchet MH, Mathews N, Goodland H, Lovegrove V, Laroze A, Nguyen VL, Sautet S, Wang R, Janson C, Smith W, Krysa G, Boullay V, De Gouville AC, Huet S, Hartley D, J Med Chem 2004 Aug 26;47(18):4494-4506. PMID:15317461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1vjy.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1VJY
  • CSU: Contacts of Structural Units for 1VJY
  • Likely Quarternary Molecular Structure file(s) for 1VJY
  • Retrieve 1VJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VJY from S2C, [Save to disk]
  • View 1VJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VJY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VJY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vjya_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1vjy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vjy_A] [1vjy]
  • SWISS-PROT database: [P36897]
  • Domain organization of [TGFR1_HUMAN] by SWISSPFAM
  • Other resources with information on 1VJY
  • Community annotation for 1VJY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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