1QBQ	Transferase	date	Apr 27, 1999
title	Structure Of Rat Farnesyl Protein Transferase Complexed With Peptide And Alpha-Hydroxyfarnesylphosphonic Acid.
authors	C.L.Strickland, W.T.Windsor, R.Syto, L.Wang, R.Bond, Z.Wu, J.Schwa H.V.Le, L.S.Beese, P.C.Weber
compound		source
Molecule: Fpt Alpha-Subunit Chain: A Ec: 2.5.1.- Engineered: Yes Other_details: Alpha And Beta Subunits Form The Biological		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116
Molecule: Fpt Beta-Subunit Chain: B Ec: 2.5.1.- Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116
Molecule: Acetyl-Cys-Val-Ile-Selenomet-Cooh Peptide Chain: P Engineered: Yes		Synthetic: Yes Other_details: Purchased From Anaspec Inc.
symmetry	Space Group: P 61	R_factor 0.218 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 174.132 174.132 69.705 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	ACE, ACT, HFP, MSE, ZN	enzyme	Transferase E.C.2.5.1 BRENDA
related structures	by homologous chain: 1N4Q, 1NI1, 1S64, 1SA5
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structure of farnesyl protein transferase complexed with a CaaX peptide and farnesyl diphosphate analogue., Strickland CL, Windsor WT, Syto R, Wang L, Bond R, Wu Z, Schwartz J, Le HV, Beese LS, Weber PC, Biochemistry 1998 Nov 24;37(47):16601-11. PMID:9843427

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk] Biological Unit Coordinates (1qbq.pdb1.gz) 123 Kb LPC: Ligand-Protein Contacts for 1QBQ CSU: Contacts of Structural Units for 1QBQ Likely Quarternary Molecular Structure file(s) for 1QBQ Retrieve 1QBQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QBQ from S2C, [Save to disk]

View 1QBQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QBQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QBQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qbqa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1qbqb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qbq_A] [1qbq_P] [1qbq] [1qbq_B] SWISS-PROT database: [Q04631] [Q02293] Domain organization of [FNTA_RAT] [FNTB_RAT] by SWISSPFAM

Other resources with information on 1QBQ

Community annotation for 1QBQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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