1S64 Transferase date Jan 22, 2004
title Rat Protein Geranylgeranyltransferase Type-I Complexed With And A Sulfate Anion
authors T.S.Reid, S.B.Long, L.S.Beese
compound source
Molecule: Protein Farnesyltransferasegeranylgeranyltransfe I Alpha Subunit;
Chain: A, C, E, G, I, K
Fragment: Alpha Subunit
Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha, Type I Protein Gerany Geranyltransferase Alpha Subunit, Ggtase-I-Alpha;
Ec: 2.5.1.58, 2.5.1.59
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Fnta
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Geranylgeranyl Transferase Type I Beta Subunit
Chain: B, D, F, H, J, L
Fragment: Beta Subunit
Synonym: Type I Protein Geranyl-Geranyltransferase Beta Sub Ggtase-I-Beta;
Ec: 2.5.1.59
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Pggt1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
271.153 268.681 184.622 90.00 131.55 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand 778, CL, MES, SO4, ZN BindingDB enzyme Transferase E.C.2.5.1.58 BRENDA
related structures by homologous chain: 1N4Q, 1N4S, 1QBQ, 1SA5
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G
  • acetylcholine receptor regul...


  • F, J, B, H, D, L


    Primary referenceCrystallographic Analysis Reveals that Anticancer Clinical Candidate L-778,123 Inhibits Protein Farnesyltransferase and Geranylgeranyltransferase-I by Different Binding Modes., Reid TS, Long SB, Beese LS, Biochemistry 2004 Jul 20;43(28):9000-8. PMID:15248757
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]
  • Biological Unit Coordinates (1s64.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (1s64.pdb2.gz) 116 Kb
  • Biological Unit Coordinates (1s64.pdb3.gz) 117 Kb
  • Biological Unit Coordinates (1s64.pdb4.gz) 116 Kb
  • Biological Unit Coordinates (1s64.pdb5.gz) 118 Kb
  • Biological Unit Coordinates (1s64.pdb6.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1S64
  • CSU: Contacts of Structural Units for 1S64
  • Likely Quarternary Molecular Structure file(s) for 1S64
  • Structure Factors (3320 Kb)
  • Retrieve 1S64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S64 from S2C, [Save to disk]
  • Re-refined 1s64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S64
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S64, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s64a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s64b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1s64c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1s64d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1s64e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1s64f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1s64g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1s64h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1s64i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1s64j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1s64k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1s64l_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s64_G] [1s64_J] [1s64_B] [1s64_A] [1s64_I] [1s64_D] [1s64_H] [1s64_K] [1s64_L] [1s64_F] [1s64_E] [1s64_C] [1s64]
  • SWISS-PROT database: [Q04631] [P53610]
  • Domain organization of [FNTA_RAT] [PGTB1_RAT] by SWISSPFAM
  • Other resources with information on 1S64
  • Community annotation for 1S64 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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