| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (69 Kb) [Save to disk]
 - Biological Unit Coordinates (1qqd.pdb1.gz) 65 Kb
- CSU: Contacts of Structural Units for 1QQD
- Likely Quarternary Molecular Structure file(s) for 1QQD
- Structure Factors (106 Kb)
- Retrieve 1QQD in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 1QQD
from S2C,
[Save to disk]
- Re-refined 1qqd structure
from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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| View 1QQD in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 1QQD |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
|
| Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 1QQD,
from MSDmotif at EBI
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1qqda1, region A:182-274
[Jmol]
[rasmolscript]
[script source]
- Domain d1qqda2, region A:2-181
[Jmol]
[rasmolscript]
[script source]
- Domain d1qqdb_, region B
[Jmol]
[rasmolscript]
[script source]
- Fold representative 1qqd from FSSP and Dali (Families of Structurally Similar Proteins)
- Class (fold), Architecture (subfold), Topology, Homologous superfamily from
CATH
- Summaries and structural analyses of PDB data files from
PDBSum
- Identification of Protein Pockets & Cavities at
CASTp
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1qqd_A] [1qqd_B] [1qqd_C]
- SWISS-PROT database: [P30504] [P61769]
- Domain organization of [1C04_HUMAN] [B2MG_HUMAN] by SWISSPFAM
- Domain found in 1QQD: [IGc1
] by SMART
- Alignments of the sequence of 1QQD with the sequences
similar proteins can be viewed for 1QQD's classification [1C04_HUMAN] [B2MG_HUMAN] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [1C04_HUMAN] [B2MG_HUMAN] at ProtoMap. Click on the Cluster number.
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Other resources with information on 1QQD |
- Community annotation for 1QQD at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
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| Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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