1R6J	Membrane Protein	date	Oct 15, 2003
title	Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
authors	B.S.Kang, Y.Devedjiev, U.Derewenda, Z.S.Derewenda
compound		source
Molecule: Syntenin 1 Chain: A Fragment: Pdz2 Domain (Residues 197-273) Synonym: Syndecan Binding Protein 1, Melanoma Differentiation Associated Protein-9, Mda-9, Scaffold Protein Pbp1, Pro-Tgf-Alpha Cytoplasmic Domain-Interacting Protein 18, Tacip18; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sdcbp Or Mda9 Or Sycl Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgst-Parallel1
symmetry	Space Group: P 1 21 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 25.876 39.544 32.276 90.00 109.64 90.00
method	X-Ray Diffraction	resolution	0.73 Å
ligand	CL	enzyme
note	1R6J is a representative structure
related structures	by homologous chain: 1NTE
Gene Ontology	Chain Function Process Component A
Primary reference	The PDZ2 domain of syntenin at ultra-high resolution: bridging the gap between macromolecular and small molecule crystallography., Kang BS, Devedjiev Y, Derewenda U, Derewenda ZS, J Mol Biol 2004 Apr 30;338(3):483-93. PMID:15081807

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1r6j.pdb1.gz) 38 Kb LPC: Ligand-Protein Contacts for 1R6J CSU: Contacts of Structural Units for 1R6J Likely Quarternary Molecular Structure file(s) for 1R6J Structure Factors (779 Kb) Retrieve 1R6J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1R6J from S2C, [Save to disk] Re-refined 1r6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1R6J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1R6J

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1R6J from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1R6J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r6ja_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r6j_A] [1r6j] SWISS-PROT database: [O00560] Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB. Domain organization of [SDCB1_HUMAN] by SWISSPFAM Domain found in 1R6J: [PDZ ] by SMART

Other resources with information on 1R6J

Community annotation for 1R6J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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