1R6V Hydrolase date Oct 17, 2003
title Crystal Structure Of Fervidolysin From Fervidobacterium Penn Keratinolytic Enzyme Related To Subtilisin
authors J.S.Kim, L.D.Kluskens, W.M.De Vos, R.Huber, J.Van Der Oost
compound source
Molecule: Subtilisin-Like Serine Protease
Chain: A
Fragment: Peptidase
Engineered: Yes
Mutation: Yes
 Organism_scientific: Fervidobacterium Pennivorans
Organism_taxid: 93466
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet9d
symmetry Space Group: P 1
R_factor 0.186 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.558 51.031 79.101 93.90 104.72 115.43
method X-Ray Diffractionresolution 1.70 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin., Kim JS, Kluskens LD, de Vos WM, Huber R, van der Oost J, J Mol Biol 2004 Jan 16;335(3):787-97. PMID:14687574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1r6v.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1R6V
  • CSU: Contacts of Structural Units for 1R6V
  • Likely Quarternary Molecular Structure file(s) for 1R6V
  • Retrieve 1R6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R6V from S2C, [Save to disk]
    • View 1R6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R6V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r6va_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r6v] [1r6v_A]
  • SWISS-PROT database: [Q93LQ6]
  • Domain organization of [Q93LQ6_FERPE] by SWISSPFAM
    • Other resources with information on 1R6V
  • Community annotation for 1R6V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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