1RGP	G-Protein	date	Dec 05, 1996
title	Gtpase-Activation Domain From Rhogap
authors	T.Barrett, B.Xiao, E.J.Dodson, G.Dodson, S.B.Ludbrook, K.Nurmahom S.J.Gamblin, A.Musacchio, S.J.Smerdon, J.F.Eccleston
compound		source
Molecule: Rhogap Chain: A Fragment: Gtpase Activation Domain Synonym: Cdc42 Gtpase-Activating Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Cytoplasm Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.086 70.086 79.205 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
related structures	by homologous chain: 1GRN, 2NGR
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of the GTPase-activating domain from p50rhoGAP., Barrett T, Xiao B, Dodson EJ, Dodson G, Ludbrook SB, Nurmahomed K, Gamblin SJ, Musacchio A, Smerdon SJ, Eccleston JF, Nature 1997 Jan 30;385(6615):458-61. PMID:9009196

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1rgp.pdb1.gz) 35 Kb CSU: Contacts of Structural Units for 1RGP Likely Quarternary Molecular Structure file(s) for 1RGP Retrieve 1RGP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RGP from S2C, [Save to disk]

View 1RGP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RGP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RGP, from MSDmotif at EBI Genome occurence of 1RGP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rgp__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rgp_A] [1rgp] SWISS-PROT database: [Q07960] Domain organization of [RHG01_HUMAN] by SWISSPFAM Domain found in 1RGP: [RhoGAP ] by SMART

Other resources with information on 1RGP

Community annotation for 1RGP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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