2NGR Hydrolase date Jul 31, 1998
title Transition State Complex For Gtp Hydrolysis By Cdc42: Compar The High Resolution Structures For Cdc42 Bound To The Activ Catalytically Compromised Forms Of The Cdc42-Gap.
authors N.Nassar, G.Hoffman, J.Clardy, R.Cerione
compound source
Molecule: Protein (Gtp Binding Protein (G25k))
Chain: A
Fragment: Full-Length Cdc42 In Complex With A C-Terminal Ac Domain Of Cdc42gap(R305a) Mutant.;
Synonym: Cdc42cdc42gap
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
Other_details: His-Tag Fusion Protein

Molecule: Protein (Gtpase Activating Protein (Rhg))
Chain: B
Fragment: Full-Length Cdc42 In Complex With A C-Terminal Ac Domain Of Cdc42gap(R305a) Mutant.;
Synonym: Cdc42cdc42gap
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
Other_details: His-Tag Fusion Protein
symmetry Space Group: P 21 21 21
R_factor 0.253 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.820 67.690 131.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand AF3, GDP, MG enzyme
related structures by homologous chain: 1HE1, 1OW3, 1RGP, 1RYF
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin protein ligase act...


  • B


    Primary referenceStructures of Cdc42 bound to the active and catalytically compromised forms of Cdc42GAP., Nassar N, Hoffman GR, Manor D, Clardy JC, Cerione RA, Nat Struct Biol 1998 Dec;5(12):1047-52. PMID:9846874
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2ngr.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 2NGR
  • CSU: Contacts of Structural Units for 2NGR
  • Likely Quarternary Molecular Structure file(s) for 2NGR
  • Retrieve 2NGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NGR from S2C, [Save to disk]
  • View 2NGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NGR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NGR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ngra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2ngrb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 2ngr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ngr] [2ngr_A] [2ngr_B]
  • SWISS-PROT database: [P60953] [Q07960]
  • Domain organization of [CDC42_HUMAN] [RHG01_HUMAN] by SWISSPFAM
  • Domains found in 2NGR: [RHO] [RhoGAP ] by SMART
  • Other resources with information on 2NGR
  • Community annotation for 2NGR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2NGR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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