1RM8 Hydrolase date Nov 27, 2003
title Crystal Structure Of The Catalytic Domain Of Mmp-16mt3-Mmp: Characterization Of Mt-Mmp Specific Features
authors R.Lang, M.Braun, N.E.Sounni, A.Noel, F.Frankenne, J.M.Foidart, W. K.Maskos
compound source
Molecule: Matrix Metalloproteinase-16
Chain: A
Fragment: Catalytic Domain
Synonym: Mmp-16; Mt3-Mmp; Membrane-Type Matrix Metalloprote Mt-Mmp 3; Mtmmp3; Membrane-Type-3 Matrix Metalloproteinase; Mmp-X2;
Ec: 3.4.24.-
Engineered: Yes
Other_details: Complexed With Batimastat (Bb94)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7cdmp3
symmetry Space Group: P 43 2 2
R_factor 0.208 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.210 51.210 149.368 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BAT, CA, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1BUV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the catalytic domain of MMP-16/MT3-MMP: characterization of MT-MMP specific features., Lang R, Braun M, Sounni NE, Noel A, Frankenne F, Foidart JM, Bode W, Maskos K, J Mol Biol 2004 Feb 6;336(1):213-25. PMID:14741217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1rm8.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1RM8
  • CSU: Contacts of Structural Units for 1RM8
  • Likely Quarternary Molecular Structure file(s) for 1RM8
  • Retrieve 1RM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RM8 from S2C, [Save to disk]
  • View 1RM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RM8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RM8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rm8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rm8] [1rm8_A]
  • SWISS-PROT database: [P51512]
  • Domain organization of [MMP16_HUMAN] by SWISSPFAM
  • Domain found in 1RM8: [ZnMc ] by SMART
  • Other resources with information on 1RM8
  • Community annotation for 1RM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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