1RM9 Luminescent Protein date Nov 27, 2003
title Probing The Role Of Tryptophans In Aequorea Victoria Green Fluorescent Proteins With An Expanded Genetic Code
authors N.Budisa, P.P.Pal, S.Alefelder, P.Birle, T.Krywcun, M.Rubini, W.Wenger, J.H.Bae, T.Steiner
compound source
Molecule: Avermectin-Sensitive Chloride Channel Glucl Betacyan Fluorescent Protein Fusion;
Chain: A
Synonym: Cyan Fluorescent Protein
Engineered: Yes
Other_details: 4-Fluorotryptophan-Containing
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pecfp
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.057 62.507 69.466 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 4F3, 4FW enzyme
related structures by homologous chain: 1KP5, 1RMP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code., Budisa N, Pal PP, Alefelder S, Birle P, Krywcun T, Rubini M, Wenger W, Bae JH, Steiner T, Biol Chem 2004 Feb;385(2):191-202. PMID:15101562
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1rm9.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1RM9
  • CSU: Contacts of Structural Units for 1RM9
  • Likely Quarternary Molecular Structure file(s) for 1RM9
  • Structure Factors (77 Kb)
  • Retrieve 1RM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RM9 from S2C, [Save to disk]
  • Re-refined 1rm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RM9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RM9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rm9a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rm9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rm9_A] [1rm9]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1RM9
  • Community annotation for 1RM9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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