1RON Neuropeptide date Jan 11, 1996
title Nmr Solution Structure Of Human Neuropeptide Y
authors S.A.Monks, G.Karagianis, G.J.Howlett, R.S.Norton
compound source
Molecule: Neuropeptide Y
Chain: A
Synonym: Npy
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand NH2 enzyme
note 1RON (Molecule of the Month:pdb149)
related structures by homologous chain: 1FVN, 1RU5
subcellular loc. Membrane localization by OPM: Secreted
out side
in side
Primary referenceSolution structure of human neuropeptide Y., Monks SA, Karagianis G, Howlett GJ, Norton RS, J Biomol NMR 1996 Dec;8(4):379-90. PMID:9008359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1RON
  • CSU: Contacts of Structural Units for 1RON
  • Original NMR restraints for 1RON from PDB
  • Retrieve 1RON in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RON from S2C, [Save to disk]
    • View 1RON in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1RON
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RON, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ron__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ron from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ron_A]
  • SWISS-PROT database: [P01303]
  • Domain organization of [NPY_HUMAN] by SWISSPFAM
  • Domain found in 1RON: [PAH ] by SMART
  • Alignments of the sequence of 1RON with the sequences similar proteins can be viewed for 1RON's classification [NPY_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NPY_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1RON
  • Community annotation for 1RON at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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