1RU5	Hormone Growth Factor	date	Dec 11, 2003
title	Solution Structure Of Porcine Peptide Yy (Ppyy)
authors	M.Lerch, M.Mayrhofer, O.Zerbe
compound		source
Molecule: Peptide Yy Chain: A Synonym: Pyy, Peptide Tyrosine Tyrosine Engineered: Yes		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Gene: Pyy Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pubk19
method	Solution NMR
ligand	NH2	enzyme
related structures	by homologous chain: 1RON, 1RUU
Gene Ontology	Chain Function Process Component A
Primary reference	Structural similarities of micelle-bound peptide YY (PYY) and neuropeptide Y (NPY) are related to their affinity profiles at the Y receptors., Lerch M, Mayrhofer M, Zerbe O, J Mol Biol 2004 Jun 18;339(5):1153-68. PMID:15178255

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk] Biological Unit Coordinates (1ru5.pdb1.gz) 10 Kb LPC: Ligand-Protein Contacts for 1RU5 CSU: Contacts of Structural Units for 1RU5 Original NMR restraints for 1RU5 from PDB Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1RU5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RU5 from S2C, [Save to disk]

View 1RU5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RU5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RU5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ru5a_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ru5] [1ru5_A] SWISS-PROT database: [P68005] Domain organization of [PYY_PIG] by SWISSPFAM Domain found in 1RU5: [PAH ] by SMART

Other resources with information on 1RU5

Community annotation for 1RU5 at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---