1RRB Transferase date Mar 26, 1998
title The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1 Structure
authors T.Terada, Y.Ito, M.Shirouzu, M.Tateno, K.Hashimoto, T.Kigawa, T.Eb K.Takio, T.Shibata, S.Yokoyama, B.O.Smith, E.D.Laue, J.A.Cooper, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Raf Proto-Oncogene Serinethreonine-Protein Kinas
Chain: A
Fragment: Ras-Binding Domain, Residues 56-131
Synonym: Raf-1 Rbd
Ec: 2.7.1.-
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet-Rid
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1GUA, 1RFA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNuclear magnetic resonance and molecular dynamics studies on the interactions of the Ras-binding domain of Raf-1 with wild-type and mutant Ras proteins., Terada T, Ito Y, Shirouzu M, Tateno M, Hashimoto K, Kigawa T, Ebisuzaki T, Takio K, Shibata T, Yokoyama S, Smith BO, Laue ED, Cooper JA, J Mol Biol 1999 Feb 12;286(1):219-32. PMID:9931261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1rrb.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1RRB
  • Retrieve 1RRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RRB from S2C, [Save to disk]
    • View 1RRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RRB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RRB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rrb__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rrb] [1rrb_A]
  • SWISS-PROT database: [P11345]
  • Domain organization of [RAF1_RAT] by SWISSPFAM
  • Domain found in 1RRB: [RBD ] by SMART
    • Other resources with information on 1RRB
  • Community annotation for 1RRB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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