1S8F	Protein Transport	date	Feb 02, 2004
title	Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer W Active Conformation Of Switch II
authors	J.G.Wittmann, M.G.Rudolph
compound		source
Molecule: Ras-Related Protein Rab-9a Chain: A, B Synonym: Rab-9, Rab9 Gtpase Engineered: Yes Other_details: C-Terminal Truncation		Organism_scientific: Canis Lupus Familiaris Organism_common: Dog Organism_taxid: 9615 Strain: Familiaris Gene: Rab9a, Rab9 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 41	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.245 98.245 79.660 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	BEZ, CL, GDP, MG, SR	enzyme
related structures	by homologous chain: 1WMS
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of Rab9 complexed to GDP reveals a dimer with an active conformation of switch II., Wittmann JG, Rudolph MG, FEBS Lett 2004 Jun 18;568(1-3):23-9. PMID:15196914

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (1s8f.pdb1.gz) 32 Kb Biological Unit Coordinates (1s8f.pdb2.gz) 31 Kb Biological Unit Coordinates (1s8f.pdb3.gz) 120 Kb Biological Unit Coordinates (1s8f.pdb4.gz) 61 Kb Biological Unit Coordinates (1s8f.pdb5.gz) 60 Kb LPC: Ligand-Protein Contacts for 1S8F CSU: Contacts of Structural Units for 1S8F Likely Quarternary Molecular Structure file(s) for 1S8F Structure Factors (336 Kb) Retrieve 1S8F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1S8F from S2C, [Save to disk] Re-refined 1s8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1S8F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S8F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1S8F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s8fa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1s8fb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s8f] [1s8f_A] [1s8f_B] SWISS-PROT database: [P24408] Domain organization of [RAB9A_CANFA] by SWISSPFAM Domain found in 1S8F: [RAB ] by SMART

Other resources with information on 1S8F

Community annotation for 1S8F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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