1SFQ Fast form of thrombin mutant R(77a)A bound to PPACK date
authors Pineda, A.O., Carrell, C.J., Bush, L.A., Prasad, S., Caccia, S., Chen, Z.W., Mathews, F.S., Cera, E.Di.
compound source
symmetry
R_factor
R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.91
ligand 0G6, NA, NAG enzyme
related structures by homologous chain: 1PPB, 1ZRB
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceMolecular dissection of Na+ binding to thrombin., Pineda AO, Carrell CJ, Bush LA, Prasad S, Caccia S, Chen ZW, Mathews FS, Di Cera E, J Biol Chem 2004 May 19;. PMID:15152000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (1sfq.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1sfq.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1SFQ
  • CSU: Contacts of Structural Units for 1SFQ
  • Likely Quarternary Molecular Structure file(s) for 1SFQ
  • Structure Factors (431 Kb)
  • Retrieve 1SFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SFQ from S2C, [Save to disk]
  • Re-refined 1sfq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SFQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SFQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sfq.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1sfq.2, region D:,E [Jmol] [rasmolscript] [script source]
  • Fold representative 1sfq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sfq_F] [1sfq_D] [1sfq_E] [1sfq_C] [1sfq_B] [1sfq_A] [1sfq]
  • SWISS-PROT database: [P00734]
  • Domain organization of [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1SFQ: [Tryp_SPc ] by SMART
  • Other resources with information on 1SFQ
  • Community annotation for 1SFQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science