1ZRB Thrombin in complex with an azafluorenyl inhibitor 23b date
authors Stauffer, K.J., Williams, P.D., Selnick, H.G., Nantermet, P.G., Newton, C.L., Homnick, C.F., Zrada, M.M., Lewis, S.D., Lucas, B.J., Krueger, J.A., Pietrak, B.L., Lyle, E.A., Singh, R., Miller-Stein, C., White, R.B., Wong, B., Wallace, A.A., Sitko, G.R., Cook, J.J., Holahan, M.A., Stranieri-Michener, M., Leonard, Y.M., Lynch, J.J., McMasters, D.R., Yan, Y.
compound source
symmetry
R_factor
R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 062, TYS enzyme
related structures by homologous chain: 1G32, 1PPB, 1SFQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference9-hydroxyazafluorenes and their use in thrombin inhibitors., Stauffer KJ, Williams PD, Selnick HG, Nantermet PG, Newton CL, Homnick CF, Zrada MM, Lewis SD, Lucas BJ, Krueger JA, Pietrak BL, Lyle EA, Singh R, Miller-Stein C, White RB, Wong B, Wallace AA, Sitko GR, Cook JJ, Holahan MA, Stranieri-Michener M, Leonard YM, Lynch JJ Jr, McMasters DR, Yan Y, J Med Chem 2005 Apr 7;48(7):2282-93. PMID:15801822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1zrb.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1ZRB
  • CSU: Contacts of Structural Units for 1ZRB
  • Likely Quarternary Molecular Structure file(s) for 1ZRB
  • Retrieve 1ZRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZRB from S2C, [Save to disk]
  • View 1ZRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZRB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ZRB, from MSDmotif at EBI
  • Fold representative 1zrb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zrb_B] [1zrb_A] [1zrb]
  • SWISS-PROT database: [P00734]
  • Domain organization of [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1ZRB: [Tryp_SPc ] by SMART
  • Other resources with information on 1ZRB
  • Community annotation for 1ZRB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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