1SII Oxidoreductase date Feb 29, 2004
title Agao In Covalent Complex With The Inhibitor Noba ("4-(2-Naph 2-Butyn-1-Amine")
authors J.M.Guss, D.B.Langley, A.P.Duff
compound source
Molecule: Phenylethylamine Oxidase
Chain: A
Synonym: Amine Oxidase
Ec: 1.4.3.6
Engineered: Yes
Other_details: Arthrobacter Globiformis Copper Amine Oxidas With Modified Amino Acid 382 Tpq - 4-(2-Naphthyloxy)-2-Buty Moiety
Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Gene: Atcc8010, Ifo12137
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pagao2
symmetry Space Group: C 1 2 1
R_factor 0.157 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.060 62.619 91.990 90.00 112.11 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CU, GOL, NA, NBQ, SO4 enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1RJO, 1SIH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential Inhibition of Six Copper Amine Oxidases by a Family of 4-(Aryloxy)-2-butynamines: Evidence for a New Mode of Inactivation., O'Connell KM, Langley DB, Shepard EM, Duff AP, Jeon HB, Sun G, Freeman HC, Guss JM, Sayre LM, Dooley DM, Biochemistry 2004 Aug 31;43(34):10965-10978. PMID:15323556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (1sii.pdb1.gz) 388 Kb
  • LPC: Ligand-Protein Contacts for 1SII
  • CSU: Contacts of Structural Units for 1SII
  • Likely Quarternary Molecular Structure file(s) for 1SII
  • Structure Factors (1164 Kb)
  • Retrieve 1SII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SII from S2C, [Save to disk]
  • Re-refined 1sii structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SII
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SII, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1siia1, region A:212-628 [Jmol] [rasmolscript] [script source]
        - Domain d1siia2, region A:9-96 [Jmol] [rasmolscript] [script source]
        - Domain d1siia3, region A:97-211 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sii_A] [1sii]
  • SWISS-PROT database: [P46881]
  • Domain organization of [PAOX_ARTGO] by SWISSPFAM
  • Other resources with information on 1SII
  • Community annotation for 1SII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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