1SJH | Immune System | date | Mar 03, 2004 |
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title | Hla-Dr1 Complexed With A 13 Residue Hiv Capsid Peptide | ||||||||||||||||||
authors | Z.Zavala-Ruiz, I.Strug, B.D.Walker, P.J.Norris, L.J.Stern | ||||||||||||||||||
compound | source | ||||||||||||||||||
Molecule: Hla Class II Histocompatibility Antigen, Dr Alpha Chain: A Fragment: Extracellular Domain Of Hla-Dra0101 Synonym: Mhc Class II Antigen Dra Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-Dra Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: T7 Polymeraselac Expression_system_plasmid: Plm1 | ||||||||||||||||||
Molecule: Hla Class II Histocompatibility Antigen, Drb1-1 B Chain: B Fragment: Extracellular Domain Of Hla-Drb0101 Synonym: Mhc Class I Antigen Drb11, Dr-1, Dr1 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-Drb1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: T7 Polymeraselac Expression_system_plasmid: Plm1 | ||||||||||||||||||
Molecule: Gag Polyprotein Chain: C Fragment: 13 Residue Peptide From Hiv-1 Gag Capsid Protein Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Synthesized Peptide With Sequence From Human Immunodeficiency Virus Type 1 (Hiv-1) Gag Capsid Protein [1 | ||||||||||||||||||
Molecule: Enterotoxin Type C-3 Chain: D Fragment: Sec3 Variant 3b2 Synonym: Sec3 Engineered: Yes Mutation: Yes |
Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Entc3, Sav2009, Sa1817 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb2151 Expression_system_vector_type: Lac | ||||||||||||||||||
symmetry | Space Group: H 3 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 2.25 Å | ||||||||||||||||
related structures | by homologous chain: 1I4Q, 1JWU, 1PYW, 1S9V | ||||||||||||||||||
Gene Ontology |
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Primary reference | A hairpin turn in a class II MHC-bound peptide orients residues outside the binding groove for T cell recognition., Zavala-Ruiz Z, Strug I, Walker BD, Norris PJ, Stern LJ, Proc Natl Acad Sci U S A 2004 Sep 7;101(36):13279-84. Epub 2004 Aug 26. PMID:15331779 |
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Structure-derived information |
- Domain d1sjha2, region A:4-81 [Jmol] [rasmolscript] [script source] - Domain d1sjha1, region A:82-181 [Jmol] [rasmolscript] [script source] - Domain d1sjhb2, region B:1-92 [Jmol] [rasmolscript] [script source] - Domain d1sjhb1, region B:93-190 [Jmol] [rasmolscript] [script source] - Domain d1sjhd1, region D:1-121 [Jmol] [rasmolscript] [script source] - Domain d1sjhd2, region D:122-239 [Jmol] [rasmolscript] [script source] |
Sequence-derived information |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |