1SJX Immune System date Mar 04, 2004
title Three-Dimensional Structure Of A Llama Vhh Domain Oe7 Bindin Wall Protein Malf1
authors E.Dolk, M.Van Der Vaart, D.L.Hulsik, G.Vriend, H.De Haard, S.Spin C.Cambillau, L.Frenken, T.Verrips
compound source
Molecule: Immunoglobulin Vh Domain
Chain: A
Engineered: Yes
Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Cell: Lymphocytes
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Other_details: Protein Selected By Phage Display
symmetry Space Group: P 32 2 1
R_factor 0.191 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.400 71.400 74.840 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MPD enzyme
related structures by homologous chain: 1FVC
Primary referenceIsolation of llama antibody fragments for prevention of dandruff by phage display in shampoo., Dolk E, van der Vaart M, Lutje Hulsik D, Vriend G, de Haard H, Spinelli S, Cambillau C, Frenken L, Verrips T, Appl Environ Microbiol 2005 Jan;71(1):442-50. PMID:15640220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1sjx.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1SJX
  • CSU: Contacts of Structural Units for 1SJX
  • Likely Quarternary Molecular Structure file(s) for 1SJX
  • Structure Factors (90 Kb)
  • Retrieve 1SJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJX from S2C, [Save to disk]
  • Re-refined 1sjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SJX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sjx_A] [1sjx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1SJX: [IGv ] by SMART
  • Other resources with information on 1SJX
  • Community annotation for 1SJX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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