1FVC Immunoglobulin date Oct 20, 1992
title X-Ray Structures Of The Antigen-Binding Domains From Three V Humanized Anti-P185-Her2 Antibody 4d5 And Comparison With M Modeling
authors C.Eigenbrot, M.Randal, A.A.Kossiakoff, L.Presta
compound source
Molecule: Igg1-Kappa 4d5 Fv (Light Chain)
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Igg1-Kappa 4d5 Fv (Heavy Chain)
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.600 63.400 90.200 90.00 98.20 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1JV5, 1KEM, 1SJX, 1TJI
Primary referenceX-ray structures of the antigen-binding domains from three variants of humanized anti-p185HER2 antibody 4D5 and comparison with molecular modeling., Eigenbrot C, Randal M, Presta L, Carter P, Kossiakoff AA, J Mol Biol 1993 Feb 20;229(4):969-95. PMID:8095303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1fvc.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (1fvc.pdb2.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1FVC
  • Likely Quarternary Molecular Structure file(s) for 1FVC
  • Structure Factors (89 Kb)
  • Retrieve 1FVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FVC from S2C, [Save to disk]
  • Re-refined 1fvc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FVC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FVC, from MSDmotif at EBI
  • Genome occurence of 1FVC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fvca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fvcb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fvcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fvcd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1fvc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fvc_C] [1fvc_A] [1fvc] [1fvc_D] [1fvc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1FVC: [IGv ] by SMART
  • Other resources with information on 1FVC
  • Community annotation for 1FVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FVC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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