1JV5 Immune System, Sugar Binding Protein date Aug 28, 2001
title Anti-Blood Group A Fv
authors R.Thomas, S.I.Patenaude, C.R.Mackenzie, R.To, T.Hirama, N.M.Young S.V.Evans
compound source
Molecule: Ig Kappa Chain Precursor V Region
Chain: A
Fragment: Anti-Blood Group A Fv
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_plasmid: Puce8

Molecule: Ig Chain Heavy Chain Precursor V Region
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_plasmid: Puce8
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.710 57.960 83.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1FVC, 1JGL, 1WT5
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of an anti-blood group A Fv and improvement of its binding affinity without loss of specificity., Thomas R, Patenaude SI, MacKenzie CR, To R, Hirama T, Young NM, Evans SV, J Biol Chem 2002 Jan 18;277(3):2059-64. PMID:11679577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1jv5.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1JV5
  • Likely Quarternary Molecular Structure file(s) for 1JV5
  • Structure Factors (108 Kb)
  • Retrieve 1JV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JV5 from S2C, [Save to disk]
  • Re-refined 1jv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JV5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JV5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jv5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jv5b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jv5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jv5] [1jv5_A] [1jv5_B]
  • SWISS-PROT database: [P01594]
  • Domain organization of [KV102_HUMAN] by SWISSPFAM
  • Domain found in 1JV5: [IGv ] by SMART
  • Other resources with information on 1JV5
  • Community annotation for 1JV5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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