1WT5	Immune System	date	Nov 16, 2004
title	The Crystal Structure Of A Humanized Antibody Fv 528
authors	K.Makabe, K.Tsumoto, R.Asano, H.Kondo, I.Kumagai
compound		source
Molecule: Anti Egfr Antibody Fv Region Chain: A, B Fragment: Vh Fragment Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Anti Egfr Antibody Fv Region Chain: C, D Fragment: Vl Fragment Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 65	R_factor 0.273 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.282 63.282 225.339 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
related structures	by homologous chain: 1A4J, 1I8M, 1JV5, 1UB6
Primary reference	Thermodynamic consequences of mutations in Vernier zone residues of a humanized anti-human epidermal growth factor receptor (EGFR) murine antibody, 528., Makabe K, Nakanishi T, Tsumoto K, Tanaka Y, Kondo H, Umetsu M, Sone Y, Asano R, Kumagai I, J Biol Chem. 2007 Oct 17;. PMID:17947238

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (1wt5.pdb1.gz) 75 Kb Biological Unit Coordinates (1wt5.pdb2.gz) 38 Kb Biological Unit Coordinates (1wt5.pdb3.gz) 39 Kb CSU: Contacts of Structural Units for 1WT5 Likely Quarternary Molecular Structure file(s) for 1WT5 Structure Factors (234 Kb) Retrieve 1WT5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1WT5 from S2C, [Save to disk] Re-refined 1wt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1WT5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1WT5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1WT5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1wt5_A] [1wt5_C] [1wt5] [1wt5_D] [1wt5_B] SWISS-PROT database: [P23083] Domain organization of [HV103_HUMAN] by SWISSPFAM Domain found in 1WT5: [IGv ] by SMART

Other resources with information on 1WT5

Community annotation for 1WT5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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