1UB6 Crystal structure of Antibody 19G2 with sera ligand date
authors Beuscher, A.B., Wirsching, P., Lerner, R.A., Janda, K., Stevens, R.C.
compound source
R_Free 0.292
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.12
related structures by homologous chain: 1FL5, 1JGL, 1W72, 1WT5
L, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (1ub6.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1ub6.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1UB6
  • Likely Quarternary Molecular Structure file(s) for 1UB6
  • Structure Factors (556 Kb)
  • Retrieve 1UB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UB6 from S2C, [Save to disk]
  • Re-refined 1ub6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UB6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UB6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ub6a2, region A:117-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6a1, region A:2-116 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6b2, region B:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6b1, region B:2-113 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6h2, region H:117-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6h1, region H:2-116 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6l2, region L:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d1ub6l1, region L:2-113 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ub6_L] [1ub6_H] [1ub6] [1ub6_B] [1ub6_A]
  • SWISS-PROT database: [P01867] [P01837]
  • Domain organization of [IGG2B_MOUSE] [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1UB6: [IG_like] [IGv ] by SMART
  • Other resources with information on 1UB6
  • Community annotation for 1UB6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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