1SMV Virus date Jun 16, 1995
title Primary Structure Of Sesbania Mosaic Virus Coat Protein: Its Implications To The Assembly And Architecture Of The Virus
authors M.Bhuvaneshwari, M.R.N.Murthy
compound source
Molecule: Sesbania Mosaic Virus Coat Protein
Chain: A, B, C
Organism_scientific: Sesbania Mosaic Virus
Organism_taxid: 12558
symmetry Space Group: R 3
R_factor 0.227 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
291.460 291.460 291.460 61.95 61.95 61.95
method X-Ray Diffractionresolution 3.00 Å
ligand CA enzyme
related structures by homologous chain: 4SBV
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of sesbania mosaic virus at 3 A resolution., Bhuvaneshwari M, Subramanya HS, Gopinath K, Savithri HS, Nayudu MV, Murthy MR, Structure. 1995 Oct 15;3(10):1021-30. PMID:8589997
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1smv.pdb1.gz) 5351 Kb
  • LPC: Ligand-Protein Contacts for 1SMV
  • CSU: Contacts of Structural Units for 1SMV
  • Likely Quarternary Molecular Structure file(s) for 1SMV
  • Structure Factors (3234 Kb)
  • Retrieve 1SMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SMV from S2C, [Save to disk]
  • View 1SMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SMV
  • VIPERdb: visual, structural and computational analysis of 1SMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SMV, from MSDmotif at EBI
  • Genome occurence of 1SMV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1smva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1smvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1smvc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1smv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1smv_B] [1smv_C] [1smv_A] [1smv]
  • SWISS-PROT database: [Q9EB06]
  • Domain organization of [Q9EB06_9VIRU] by SWISSPFAM
  • Other resources with information on 1SMV
  • Community annotation for 1SMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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