1SSF Cell Cycle date Mar 24, 2004
title Solution Structure Of The Mouse 53bp1 Fragment (Residues 146
authors G.Charier, J.Couprie, B.Alpha-Bazin, V.Meyer, E.Quemeneur, R.Guer I.Callebaut, B.Gilquin, S.Zinn-Justin
compound source
Molecule: Transformation Related Protein 53 Binding Protein
Chain: A
Fragment: Residues 1463-1617
Synonym: Murine P53-Binding Protein
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Gold(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest15
methodSolution NMR
related structures by homologous chain: 1XNI
Primary referenceThe Tudor Tandem of 53BP1; A New Structural Motif Involved in DNA and RG-Rich Peptide Binding., Charier G, Couprie J, Alpha-Bazin B, Meyer V, Quemeneur E, Guerois R, Callebaut I, Gilquin B, Zinn-Justin S, Structure (Camb) 2004 Sep;12(9):1551-62. PMID:15341721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • Biological Unit Coordinates (1ssf.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1SSF
  • Original NMR restraints for 1SSF from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1SSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SSF from S2C, [Save to disk]
  • View 1SSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SSF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SSF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ssfa2, region A:61-129 [Jmol] [rasmolscript] [script source]
        - Domain d1ssfa1, region A:7-60 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ssf_A] [1ssf]
  • SWISS-PROT database: [P70399]
  • Domain organization of [TP53B_MOUSE] by SWISSPFAM
  • Other resources with information on 1SSF
  • Community annotation for 1SSF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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