1XNI Tandem Tudor Domain of 53BP1 date
authors Huyen, Y., Zgheib, O., DiTullio, R.A., Gorgoulis, V.G., Zacharatos, P., Petty, T.J., Sheston, E.A., Mellert, H.S., Stavridi, E.S., Halazonetis, T.D.
compound source
symmetry
R_factor
R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
related structures by homologous chain: 1SSF
Primary referenceMethylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks., Huyen Y, Zgheib O, Ditullio RA Jr, Gorgoulis VG, Zacharatos P, Petty TJ, Sheston EA, Mellert HS, Stavridi ES, Halazonetis TD, Nature 2004 Nov 18;432(7015):406-11. Epub 2004 Nov 03. PMID:15525939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1xni.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb5.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb6.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb7.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb8.gz) 22 Kb
  • Biological Unit Coordinates (1xni.pdb9.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1XNI
  • Likely Quarternary Molecular Structure file(s) for 1XNI
  • Structure Factors (284 Kb)
  • Retrieve 1XNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XNI from S2C, [Save to disk]
  • Re-refined 1xni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XNI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XNI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1xnia1, region A:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnia2, region A:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnib1, region B:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnib2, region B:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnic1, region C:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnic2, region C:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnid1, region D:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnid2, region D:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnie1, region E:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnie2, region E:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnif1, region F:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnif2, region F:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnig1, region G:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnig2, region G:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnih1, region H:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnih2, region H:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnii1, region I:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnii2, region I:1538-1602 [Jmol] [rasmolscript] [script source]
        - Domain d1xnij1, region J:1485-1537 [Jmol] [rasmolscript] [script source]
        - Domain d1xnij2, region J:1538-1602 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xni_H] [1xni_B] [1xni_F] [1xni_I] [1xni_G] [1xni_E] [1xni_A] [1xni_D] [1xni] [1xni_C] [1xni_J]
  • SWISS-PROT database: [Q12888]
  • Domain organization of [TP53B_HUMAN] by SWISSPFAM
  • Other resources with information on 1XNI
  • Community annotation for 1XNI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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