1STC Complex (Transferase Inhibitor) date Oct 10, 1997
title Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Co Staurosporine
authors L.Prade, R.A.Engh, A.Girod, V.Kinzel, R.Huber, D.Bossemeyer
compound source
Molecule: Camp-Dependent Protein Kinase
Chain: E
Fragment: Catalytic Subunit
Synonym: Capk, Protein Kinase A, Pka C-Alpha
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell_line: Bl21
Organ: Heart
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plys
Expression_system_plasmid: Pt7-7

Molecule: Protein Kinase Inhibitor
Chain: I
Fragment: Inhibitory Domain
Synonym: Pki, Pki-Alpha
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.330
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.990 72.820 76.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SEP, STU, TPO BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1SVH, 1YDT
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceStaurosporine-induced conformational changes of cAMP-dependent protein kinase catalytic subunit explain inhibitory potential., Prade L, Engh RA, Girod A, Kinzel V, Huber R, Bossemeyer D, Structure 1997 Dec 15;5(12):1627-37. PMID:9438863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1stc.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1STC
  • CSU: Contacts of Structural Units for 1STC
  • Likely Quarternary Molecular Structure file(s) for 1STC
  • Retrieve 1STC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1STC from S2C, [Save to disk]
  • View 1STC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1STC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1STC, from MSDmotif at EBI
  • Genome occurence of 1STC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1stce_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1stc_E] [1stc_I] [1stc]
  • SWISS-PROT database: [P61926] [P00517]
  • Domain organization of [IPKA_RABIT] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 1STC: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1STC
  • Community annotation for 1STC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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