1SVH Transferase date Mar 29, 2004
title Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8
authors C.B.Breitenlechner, T.Wegge, L.Berillon, K.Graul, K.Marzenell, W.G.Friebe, U.Thomas, R.Schumacher, R.Huber, R.A.Engh, B.Masjost
compound source
Molecule: Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit;
Chain: A
Synonym: Pka C-Alpha, Protein Kinase A
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Prkaca
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7

Molecule: Camp-Dependent Protein Kinase Inhibitor, Alpha Form;
Chain: B
Fragment: Residues 5-24
Synonym: Pki-Alpha, Camp-Dependent Protein Kinase Inhibitor, Musclebrain Isoform;
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Sequence Of The Peptide Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.166 79.155 80.587 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand I08, SEP, TPO BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1REK, 1STC
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure-based optimization of novel azepane derivatives as PKB inhibitors., Breitenlechner CB, Wegge T, Berillon L, Graul K, Marzenell K, Friebe WG, Thomas U, Schumacher R, Huber R, Engh RA, Masjost B, J Med Chem 2004 Mar 11;47(6):1375-90. PMID:14998327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1svh.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 1SVH
  • CSU: Contacts of Structural Units for 1SVH
  • Likely Quarternary Molecular Structure file(s) for 1SVH
  • Retrieve 1SVH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVH from S2C, [Save to disk]
  • View 1SVH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SVH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1svh] [1svh_B] [1svh_A]
  • SWISS-PROT database: [P63249] [P00517]
  • Domain organization of [IPKA_RAT] [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 1SVH: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1SVH
  • Community annotation for 1SVH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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