1SVC Transcription Dna date Nov 27, 1995
title Nfkb P50 Homodimer Bound To Dna
authors C.W.Mueller, S.C.Harrison
compound source
Molecule: Dna (5'- D(Apgpaptpgpgpgpgpapaptpcpcpcpcptpa Pgpa)-3');
Chain: D
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Nuclear Factor Kappa-B (Nf-Kb))
Chain: P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.225 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.000 137.000 57.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1NFI, 1OOA
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructure of the NF-kappa B p50 homodimer bound to DNA., Muller CW, Rey FA, Sodeoka M, Verdine GL, Harrison SC, Nature 1995 Jan 26;373(6512):311-7. PMID:7830764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1svc.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 1SVC
  • Likely Quarternary Molecular Structure file(s) for 1SVC
  • Retrieve 1SVC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVC from S2C, [Save to disk]
  • View 1SVC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SVC, from MSDmotif at EBI
  • Genome occurence of 1SVC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1svcp1, region P:251-353 [Jmol] [rasmolscript] [script source]
        - Domain d1svcp2, region P:43-250 [Jmol] [rasmolscript] [script source]
  • Fold representative 1svc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1svc_P] [1svc_D] [1svc]
  • SWISS-PROT database: [P19838]
  • Domain organization of [NFKB1_HUMAN] by SWISSPFAM
  • Domain found in 1SVC: [IPT ] by SMART
  • Other resources with information on 1SVC
  • Community annotation for 1SVC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1SVC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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