1T0T Structural Genomics, Unknown Function date Apr 12, 2004
title Crystallographic Structure Of A Putative Chlorite Dismutase
authors M.Gilski, D.Borek, Y.Chen, F.Collart, A.Joachimiak, Z.Otwinowski, Center For Structural Genomics (Mcsg)
compound source
Molecule: Apc35880
Chain: V, W, X, Y, Z
Engineered: Yes
 Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
symmetry Space Group: I 2 3
R_factor 0.156 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
202.839 202.839 202.839 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand MG, P33 enzyme
Gene
Ontology
ChainFunctionProcessComponent
Z, W, X, Y, V
  • peroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (1t0t.pdb1.gz) 225 Kb
  • Biological Unit Coordinates (1t0t.pdb2.gz) 2665 Kb
  • LPC: Ligand-Protein Contacts for 1T0T
  • CSU: Contacts of Structural Units for 1T0T
  • Likely Quarternary Molecular Structure file(s) for 1T0T
  • Retrieve 1T0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T0T from S2C, [Save to disk]
    • View 1T0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T0T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T0T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t0tv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1t0tw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1t0tx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1t0ty_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1t0tz_, region Z [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t0t_Z] [1t0t_Y] [1t0t] [1t0t_W] [1t0t_X] [1t0t_V]
  • SWISS-PROT database: [Q5KUD5]
  • Domain organization of [Y3416_GEOKA] by SWISSPFAM
    • Other resources with information on 1T0T
  • Community annotation for 1T0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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