1T5J Structural Genomics, Unknown Function date May 04, 2004
title Crystal Structure Of Ribosylglycohydrolase Mj1187 From Metha Jannaschii
authors A.Gogos, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Hypothetical Protein Mj1187
Chain: A
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Gene: Mj1187
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26b
symmetry Space Group: P 43 21 2
R_factor 0.204 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.775 69.775 139.724 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1t5j.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1T5J
  • CSU: Contacts of Structural Units for 1T5J
  • Likely Quarternary Molecular Structure file(s) for 1T5J
  • Structure Factors (83 Kb)
  • Retrieve 1T5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T5J from S2C, [Save to disk]
  • Re-refined 1t5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1T5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T5J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T5J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t5ja_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t5j_A] [1t5j]
  • SWISS-PROT database: [Q58588]
  • Domain organization of [Y1187_METJA] by SWISSPFAM
    • Other resources with information on 1T5J
  • Community annotation for 1T5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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