1T77 Signaling Protein date May 08, 2004
title Crystal Structure Of The Ph-Beach Domains Of Human Lrbabgl
authors D.Gebauer, J.Li, G.Jogl, Y.Shen, D.G.Myszka, L.Tong
compound source
Molecule: Lipopolysaccharide-Responsive And Beige-Like Anchor Protein;
Chain: A, B, C, D
Fragment: Residues 2076-2489 Of Sws Entry P50851
Synonym: Ph-Beach Domains Of Lrbabgl; Cdc4-Like Protein Beige-Like Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrba, Lba, Cdc4l, Bgl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
73.218 102.239 131.519 90.00 90.47 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1MI1
Primary referenceCrystal Structure of the PH-BEACH Domains of Human LRBA/BGL., Gebauer D, Li J, Jogl G, Shen Y, Myszka DG, Tong L, Biochemistry 2004 Nov 30;43(47):14873-80. PMID:15554694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (1t77.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (1t77.pdb2.gz) 73 Kb
  • Biological Unit Coordinates (1t77.pdb3.gz) 73 Kb
  • Biological Unit Coordinates (1t77.pdb4.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1T77
  • Likely Quarternary Molecular Structure file(s) for 1T77
  • Retrieve 1T77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T77 from S2C, [Save to disk]
  • View 1T77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T77
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1T77, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t77a2, region A:2076-2185 [Jmol] [rasmolscript] [script source]
        - Domain d1t77a1, region A:2186-2489 [Jmol] [rasmolscript] [script source]
        - Domain d1t77b2, region B:2076-2185 [Jmol] [rasmolscript] [script source]
        - Domain d1t77b1, region B:2186-2489 [Jmol] [rasmolscript] [script source]
        - Domain d1t77c2, region C:2076-2185 [Jmol] [rasmolscript] [script source]
        - Domain d1t77c1, region C:2186-2489 [Jmol] [rasmolscript] [script source]
        - Domain d1t77d2, region D:2076-2185 [Jmol] [rasmolscript] [script source]
        - Domain d1t77d1, region D:2186-2489 [Jmol] [rasmolscript] [script source]
  • Fold representative 1t77 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t77] [1t77_A] [1t77_B] [1t77_C] [1t77_D]
  • SWISS-PROT database: [P50851]
  • Domain organization of [LRBA_HUMAN] by SWISSPFAM
  • Domain found in 1T77: [Beach ] by SMART
  • Other resources with information on 1T77
  • Community annotation for 1T77 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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