1MI1 Signaling Protein date Aug 21, 2002
title Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin
authors G.Jogl, Y.Shen, D.Gebauer, J.Li, K.Wiegmann, H.Kashkar, M.Kroenke, L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Neurobeachin
Chain: A, B
Fragment: Residues 2150-2563 Of Gb Entry Aam53531
Synonym: Bcl8b Protein; Kiaa1544 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dl41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 61
R_factor 0.230 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.910 179.910 98.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand MSE enzyme
related structures by homologous chain: 1T77
Primary referenceCrystal structure of the BEACH domain reveals an unusual fold and extensive association with a novel PH domain., Jogl G, Shen Y, Gebauer D, Li J, Wiegmann K, Kashkar H, Kronke M, Tong L, EMBO J 2002 Sep 16;21(18):4785-95. PMID:12234919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1mi1.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 1MI1
  • CSU: Contacts of Structural Units for 1MI1
  • Likely Quarternary Molecular Structure file(s) for 1MI1
  • Structure Factors (347 Kb)
  • Retrieve 1MI1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MI1 from S2C, [Save to disk]
  • Re-refined 1mi1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MI1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MI1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MI1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mi1a2, region A:2140-2248 [Jmol] [rasmolscript] [script source]
        - Domain d1mi1a1, region A:2249-2553 [Jmol] [rasmolscript] [script source]
        - Domain d1mi1b2, region B:2140-2248 [Jmol] [rasmolscript] [script source]
        - Domain d1mi1b1, region B:2249-2553 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mi1_B] [1mi1] [1mi1_A]
  • SWISS-PROT database: [Q8NFP9]
  • Domain organization of [NBEA_HUMAN] by SWISSPFAM
  • Domain found in 1MI1: [Beach ] by SMART
  • Other resources with information on 1MI1
  • Community annotation for 1MI1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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