1TVR Aspartyl Protease date Apr 16, 1996
title Hiv-1 Rt9-Cl Tibo
authors K.Das, J.Ding, Y.Hsiou, E.Arnold
compound source
Molecule: Reverse Transcriptase
Chain: A
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 (Clone 12);
Organism_taxid: 11679
Strain: Bh10
Cell_line: 293
Atcc: Accession Number 1065288
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
Expression_system_vector_type: Bacterial
Other_details: Human Immunodeficiency Virus Type 1 (Hiv-1) Subcloned From Bh10 Isolate. Expressed And Processed By Bacterial Escherichia Coli. Ref. A.Hizi, Et Al., (1988) Proc. Natl. Acad. Sci. Usa 85, 1218-1222. Ref. P.K.Clark, Et Al., (1990) Aids Res. Hum. Retroviruses 6, 753-764.;

Molecule: Reverse Transcriptase
Chain: B
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus Type 1 (Clone 12);
Organism_taxid: 11679
Strain: Bh10
Cell_line: 293
Atcc: Accession Number 1065288
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
Expression_system_vector_type: Bacterial
Other_details: Human Immunodeficiency Virus Type 1 (Hiv-1) Subcloned From Bh10 Isolate. Expressed And Processed By Bacterial Escherichia Coli. Ref. A.Hizi, Et Al., (1988) Proc. Natl. Acad. Sci. Usa 85, 1218-1222. Ref. P.K.Clark, Et Al., (1990) Aids Res. Hum. Retroviruses 6, 753-764.
symmetry Space Group: C 1 2 1
R_factor 0.259 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
226.000 69.300 104.100 90.00 107.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand TB9 BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1RT7, 1SUQ
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant., Das K, Ding J, Hsiou Y, Clark AD Jr, Moereels H, Koymans L, Andries K, Pauwels R, Janssen PA, Boyer PL, Clark P, Smith RH Jr, Kroeger Smith MB, Michejda CJ, Hughes SH, Arnold E, J Mol Biol 1996 Dec 20;264(5):1085-100. PMID:9000632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (1tvr.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1TVR
  • CSU: Contacts of Structural Units for 1TVR
  • Likely Quarternary Molecular Structure file(s) for 1TVR
  • Structure Factors (211 Kb)
  • Retrieve 1TVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TVR from S2C, [Save to disk]
  • Re-refined 1tvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TVR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TVR, from MSDmotif at EBI
  • Genome occurence of 1TVR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tvra2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1tvra1, region A:430-558 [Jmol] [rasmolscript] [script source]
        - Domain d1tvrb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1tvr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tvr_A] [1tvr_B] [1tvr]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Other resources with information on 1TVR
  • Community annotation for 1TVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1TVR from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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