1U3T Oxidoreductase date Jul 23, 2004
title Crystal Structure Of Human Alcohol Dehydrogenase Alpha-Alpha Complexed With N-Cyclopentyl-N-Cyclobutylformamide Determin Angstrom Resolution
authors B.J.Gibbons, T.D.Hurley
compound source
Molecule: Alcohol Dehydrogenase Alpha Chain
Chain: A, B
Synonym: Alcohol Dehydrogenase Alpha-Alpha Isoform
Ec: 1.1.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adh1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5-Alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2233
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.000 71.470 92.790 90.00 102.84 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand CCB, NAD, ZN BindingDB enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1HDX, 1HDZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of three class I human alcohol dehydrogenases complexed with isoenzyme specific formamide inhibitors., Gibbons BJ, Hurley TD, Biochemistry 2004 Oct 5;43(39):12555-62. PMID:15449945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (1u3t.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 1U3T
  • CSU: Contacts of Structural Units for 1U3T
  • Likely Quarternary Molecular Structure file(s) for 1U3T
  • Structure Factors (192 Kb)
  • Retrieve 1U3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U3T from S2C, [Save to disk]
  • Re-refined 1u3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U3T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U3T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1u3ta1, region A:1-162,A:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1u3ta2, region A:163-338 [Jmol] [rasmolscript] [script source]
        - Domain d1u3tb1, region B:1-162,B:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1u3tb2, region B:163-338 [Jmol] [rasmolscript] [script source]
  • Fold representative 1u3t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u3t] [1u3t_B] [1u3t_A]
  • SWISS-PROT database: [P07327]
  • Domain organization of [ADH1A_HUMAN] by SWISSPFAM
  • Other resources with information on 1U3T
  • Community annotation for 1U3T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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