1HDZ THREE-DIMENSIONAL STRUCTURES OF THREE HUMAN ALCOHOL DEHYDROGENASE VARIANTS: CORRELATIONS WITH THEIR FUNCTIONAL DIFFERENCES date
authors Hurley, T.D., Amzel, L.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand CL, NAD, ZN enzyme
related structures by homologous chain: 1D1T, 1U3T
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of three human beta alcohol dehydrogenase variants. Correlations with their functional differences., Hurley TD, Bosron WF, Stone CL, Amzel LM, J Mol Biol 1994 Jun 10;239(3):415-29. PMID:8201622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1hdz.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 1HDZ
  • CSU: Contacts of Structural Units for 1HDZ
  • Likely Quarternary Molecular Structure file(s) for 1HDZ
  • Structure Factors (183 Kb)
  • Retrieve 1HDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HDZ from S2C, [Save to disk]
  • Re-refined 1hdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HDZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HDZ, from MSDmotif at EBI
  • Genome occurence of 1HDZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hdza1, region A:1-162,A:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1hdza2, region A:163-338 [Jmol] [rasmolscript] [script source]
        - Domain d1hdzb1, region B:1-162,B:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1hdzb2, region B:163-338 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hdz_A] [1hdz] [1hdz_B]
  • SWISS-PROT database: [P00325]
  • Domain organization of [ADH1B_HUMAN] by SWISSPFAM
    • Other resources with information on 1HDZ
  • Community annotation for 1HDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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