1D1T Oxidoreductase date Sep 21, 1999
title Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At 141
authors P.T.Xie, T.D.Hurley
compound source
Molecule: Alcohol Dehydrogenase Class Iv Sigma Chain
Chain: A, B, C, D
Synonym: Retinol Dehydrogenase, Gastric Alcohol Dehydrogena
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pkk223-3 Ampicillin Selectable Ve Pharmacia
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.274
length a length b length c angle alpha angle beta angle gamma
85.900 90.500 119.800 90.00 99.30 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACT, CAC, NAD, ZN enzyme Oxidoreductase E.C. BRENDA
related structures by homologous chain: 1HDZ, 8ADH
A, D, C, B
  • receptor antagonist activity...

  • Primary referenceMethionine-141 directly influences the binding of 4-methylpyrazole in human sigma sigma alcohol dehydrogenase., Xie PT, Hurley TD, Protein Sci 1999 Dec;8(12):2639-44. PMID:10631979
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1d1t.pdb1.gz) 236 Kb
  • Biological Unit Coordinates (1d1t.pdb2.gz) 123 Kb
  • Biological Unit Coordinates (1d1t.pdb3.gz) 121 Kb
  • Biological Unit Coordinates (1d1t.pdb4.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1D1T
  • CSU: Contacts of Structural Units for 1D1T
  • Likely Quarternary Molecular Structure file(s) for 1D1T
  • Structure Factors (479 Kb)
  • Retrieve 1D1T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D1T from S2C, [Save to disk]
  • Re-refined 1d1t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D1T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D1T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D1T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d1ta1, region A:1-162,A:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1d1ta2, region A:163-338 [Jmol] [rasmolscript] [script source]
        - Domain d1d1tb1, region B:1-162,B:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1d1tb2, region B:163-338 [Jmol] [rasmolscript] [script source]
        - Domain d1d1tc1, region C:1-162,C:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1d1tc2, region C:163-338 [Jmol] [rasmolscript] [script source]
        - Domain d1d1td1, region D:1-162,D:339-374 [Jmol] [rasmolscript] [script source]
        - Domain d1d1td2, region D:163-338 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d1t_C] [1d1t_B] [1d1t_D] [1d1t_A] [1d1t]
  • SWISS-PROT database: [P40394]
  • Domain organization of [ADH7_HUMAN] by SWISSPFAM
  • Other resources with information on 1D1T
  • Community annotation for 1D1T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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