8ADH Oxidoreductase(Nad(A)-Choh(D)) date Apr 20, 1989
title Interdomain Motion In Liver Alcohol Dehydrogenase. Structura Energetic Analysis Of The Hinge Bending Mode
authors T.A.Jones, H.Eklund
compound source
Molecule: Apo-Liver Alcohol Dehydrogenase
Chain: A
Ec: 1.1.1.1
Engineered: Yes
 Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
symmetry Space Group: C 2 2 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.000 75.200 181.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
note 8ADH supersedes 4ADH, 3ADH
related structures by homologous chain: 1ADB, 1D1T
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInterdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode., Colonna-Cesari F, Perahia D, Karplus M, Eklund H, Braden CI, Tapia O, J Biol Chem 1986 Nov 15;261(32):15273-80. PMID:3771574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (8adh.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 8ADH
  • CSU: Contacts of Structural Units for 8ADH
  • Likely Quarternary Molecular Structure file(s) for 8ADH
  • Retrieve 8ADH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 8ADH from S2C, [Save to disk]
    • View 8ADH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 8ADH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 8ADH, from MSDmotif at EBI
  • Genome occurence of 8ADH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d8adh_1, region 1-163,340-374 [Jmol] [rasmolscript] [script source]
        - Domain d8adh_2, region 164-339 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [8adh_A] [8adh]
  • SWISS-PROT database: [P00327]
  • Domain organization of [ADH1E_HORSE] by SWISSPFAM
    • Other resources with information on 8ADH
  • Community annotation for 8ADH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 8ADH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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