1UDM Protein Binding date May 01, 2003
title Solution Structure Of Coactosin-Like Protein (Cofilin Family Musculus
authors A.K.Goroncy, T.Kigawa, S.Koshiba, N.Kobayashi, N.Tochio, M.Inoue, S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Coactosin-Like Protein
Chain: A
Synonym: Cofilin-Adf
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 2010004c08
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P020412-60
Other_details: Cell-Free Synthesis System
methodSolution NMR
related structures by homologous chain: 1T2L, 1WM4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR solution structures of actin depolymerizing factor homology domains., Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Sato M, Inoue M, Watanabe S, Hayashizaki Y, Tanaka A, Kigawa T, Yokoyama S, Protein Sci. 2009 Nov;18(11):2384-92. PMID:19768801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (1udm.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1UDM
  • Original NMR restraints for 1UDM from PDB
  • Retrieve 1UDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UDM from S2C, [Save to disk]
    • View 1UDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1UDM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1UDM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1udma_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1udm_A] [1udm]
  • SWISS-PROT database: [Q9CQI6]
  • Domain organization of [COTL1_MOUSE] by SWISSPFAM
  • Domain found in 1UDM: [ADF ] by SMART
    • Other resources with information on 1UDM
  • Community annotation for 1UDM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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