1UJ5	Isomerase	date	Jul 26, 2003
title	Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Complexed With Ribose-5-Phosphate
authors	K.Hamada, H.Ago, M.Sugahara, Y.Nodake, S.Kuramitsu, S.Yokoyama, M. Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Ribose 5-Phosphate Isomerase Chain: A Ec: 5.3.1.6 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 274 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-11a
symmetry	Space Group: C 2 2 21	R_factor 0.188 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.892 62.009 131.172 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	5RP, CL	enzyme	Isomerase E.C.5.3.1.6 BRENDA
related structures	by homologous chain: 1UJ4
Gene Ontology	Chain Function Process Component A
Primary reference	Oxyanion hole-stabilized stereospecific isomerization in ribose-5-phosphate isomerase (Rpi)., Hamada K, Ago H, Sugahara M, Nodake Y, Kuramitsu S, Miyano M, J Biol Chem 2003 Dec 5;278(49):49183-90. Epub 2003 Sep 17. PMID:13679361

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (1uj5.pdb1.gz) 40 Kb Biological Unit Coordinates (1uj5.pdb2.gz) 78 Kb LPC: Ligand-Protein Contacts for 1UJ5 CSU: Contacts of Structural Units for 1UJ5 Likely Quarternary Molecular Structure file(s) for 1UJ5 Structure Factors (163 Kb) Retrieve 1UJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UJ5 from S2C, [Save to disk] Re-refined 1uj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UJ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UJ5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1uj5a2, region A:132-205 [Jmol] [rasmolscript] [script source]     - Domain d1uj5a1, region A:3-131,A:206-227 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1uj5_A] [1uj5] SWISS-PROT database: [Q72J47] Domain organization of [RPIA_THET2] by SWISSPFAM

Other resources with information on 1UJ5

Community annotation for 1UJ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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