1UOU Transferase date Sep 23, 2003
title Crystal Structure Of Human Thymidine Phosphorylase In Complex With A Small Molecule Inhibitor
authors R.A.Norman, S.T.Barry, M.Bate, J.Breed, J.G.Colls, R.J.Ernill, R.W.A.Luke, C.A.Minshull, M.S.B.Mcalister, E.J.Mccall, H.H.J.Mcmiken, D.S.Paterson, D.Timms, J.A.Tucker, R.A.Pauptit
compound source
Molecule: Thymidine Phosphorylase
Chain: A
Fragment: Residues 12-408,411-482
Synonym: Tdrpase, Tp, Platelet-Derived Endothelial Cell Growth Factor, Pd-Ecgf, Gliostatin;
Ec: 2.4.2.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pmoal-10t
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.990 66.090 96.870 90.00 106.54 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand CMU BindingDB enzyme Transferase E.C.2.4.2.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human thymidine phosphorylase in complex with a small molecule inhibitor., Norman RA, Barry ST, Bate M, Breed J, Colls JG, Ernill RJ, Luke RW, Minshull CA, McAlister MS, McCall EJ, McMiken HH, Paterson DS, Timms D, Tucker JA, Pauptit RA, Structure (Camb) 2004 Jan;12(1):75-84. PMID:14725767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1uou.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 1UOU
  • CSU: Contacts of Structural Units for 1UOU
  • Likely Quarternary Molecular Structure file(s) for 1UOU
  • Structure Factors (117 Kb)
  • Retrieve 1UOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UOU from S2C, [Save to disk]
  • Re-refined 1uou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UOU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UOU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uoua2, region A:101-373 [Jmol] [rasmolscript] [script source]
        - Domain d1uoua1, region A:33-100 [Jmol] [rasmolscript] [script source]
        - Domain d1uoua3, region A:374-480 [Jmol] [rasmolscript] [script source]
  • Fold representative 1uou from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uou] [1uou_A]
  • SWISS-PROT database: [P19971]
  • Domain organization of [TYPH_HUMAN] by SWISSPFAM
  • Domain found in 1UOU: [PYNP_C ] by SMART
  • Alignments of the sequence of 1UOU with the sequences similar proteins can be viewed for 1UOU's classification [TYPH_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TYPH_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1UOU
  • Community annotation for 1UOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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