1V81 Signaling Protein date Dec 27, 2003
title Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
authors R.Kitahara, S.Yokoyama, K.Akasaka, Riken Structural Genomicspr Initiative (Rsgi)
compound source
Molecule: Ubiquitin60s Ribosomal Protein L40 Fusion
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
methodSolution NMR
related structures by homologous chain: 1V80, 1WR1
Primary referenceNMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar., Kitahara R, Yokoyama S, Akasaka K, J Mol Biol. 2005 Mar 25;347(2):277-85. PMID:15740740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (1v81.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1V81
  • Original NMR restraints for 1V81 from PDB
  • Retrieve 1V81 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V81 from S2C, [Save to disk]
    • View 1V81 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1V81
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1V81, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v81] [1v81_A]
  • SWISS-PROT database: [P62990]
  • Domain organization of [UBIQ_BOVIN] by SWISSPFAM
  • Domain found in 1V81: [UBQ ] by SMART
    • Other resources with information on 1V81
  • Community annotation for 1V81 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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